Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Ddx56Q9D0R4 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ddx56Q9D0R4 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ddx56Q9D0R4 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ddx56Q9D0R4 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Ddx56Q9D0R4 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
Ddx56Q9D0R4 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ddx56Q9D0R4 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Gm7222-201ENSMUST00000117512 906 ntBASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Gm7862-201ENSMUST00000121461 292 ntBASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Gm7230-201ENSMUST00000173026 815 ntBASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ddx56Q9D0R4 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Gm11452-201ENSMUST00000122376 690 ntBASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Gm18489-201ENSMUST00000172565 551 ntBASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Mir8098-201ENSMUST00000184011 137 ntBASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Gm37153-201ENSMUST00000193637 231 ntBASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ddx56Q9D0R4 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ddx56Q9D0R4 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms