Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Gm15794-201ENSMUST00000120182 631 ntBASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx28Q9CWT6 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ddx28Q9CWT6 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Mir6404-201ENSMUST00000183699 94 ntBASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ddx28Q9CWT6 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.35□□□□□ -0.11
Ddx28Q9CWT6 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ddx28Q9CWT6 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms