Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Gm7230-201ENSMUST00000173026 815 ntBASIC17.13■□□□□ 0.33
Smc1aQ9CU62 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Gm43332-201ENSMUST00000202511 1044 ntBASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Gm7506-201ENSMUST00000207758 815 ntBASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 AC154527.4-201ENSMUST00000224364 1667 ntBASIC17.13■□□□□ 0.33
Smc1aQ9CU62 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Smc1aQ9CU62 AC174678.1-201ENSMUST00000228007 2749 ntBASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Gm13418-201ENSMUST00000119097 944 ntBASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Sybu-209ENSMUST00000228639 4113 ntBASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smc1aQ9CU62 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Gm15173-201ENSMUST00000122049 433 ntBASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms