Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Gm37584-201ENSMUST00000193595 1290 ntBASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Gm5364-201ENSMUST00000216789 889 ntBASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Gm43598-201ENSMUST00000202482 2479 ntBASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nup88Q8CEC0 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 AC174678.1-201ENSMUST00000228007 2749 ntBASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Nup88Q8CEC0 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gm4459-201ENSMUST00000118750 468 ntBASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gm8000-201ENSMUST00000188378 592 ntBASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gm6089-201ENSMUST00000197666 938 ntBASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gm9172-201ENSMUST00000212092 954 ntBASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Psmb5-202ENSMUST00000227257 622 ntBASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Nup88Q8CEC0 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Gm11780-201ENSMUST00000136880 516 ntBASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Mir6404-201ENSMUST00000183699 94 ntBASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nup88Q8CEC0 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nup88Q8CEC0 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nup88Q8CEC0 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Nup88Q8CEC0 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
Nup88Q8CEC0 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nup88Q8CEC0 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nup88Q8CEC0 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 170.2 ms