Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm25287-201ENSMUST00000103846 110 ntBASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Gm22918-201ENSMUST00000103855 110 ntBASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Gm22175-201ENSMUST00000175007 78 ntBASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Gm7774-201ENSMUST00000200064 533 ntBASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Gm15483-201ENSMUST00000120338 456 ntBASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Usp40Q8BWR4 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 AC124732.2-201ENSMUST00000221977 316 ntBASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp40Q8BWR4 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Gm10253-201ENSMUST00000194270 940 ntBASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp40Q8BWR4 Gm8096-201ENSMUST00000209921 1591 ntBASIC20.89■□□□□ 0.94
Usp40Q8BWR4 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Usp40Q8BWR4 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Gm7336-201ENSMUST00000107041 1232 ntBASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Gm24158-201ENSMUST00000175263 71 ntBASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Gm20949-201ENSMUST00000206478 952 ntBASIC20.89■□□□□ 0.93
Usp40Q8BWR4 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp40Q8BWR4 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp40Q8BWR4 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp40Q8BWR4 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp40Q8BWR4 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp40Q8BWR4 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp40Q8BWR4 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC20.88■□□□□ 0.93
Usp40Q8BWR4 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
Usp40Q8BWR4 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms