Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp49Q6P9L4 Gm45293-201ENSMUST00000209754 1812 ntBASIC17.14■□□□□ 0.34
Usp49Q6P9L4 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.14■□□□□ 0.33
Usp49Q6P9L4 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp49Q6P9L4 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.13■□□□□ 0.33
Usp49Q6P9L4 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Rps4l-201ENSMUST00000071745 943 ntBASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp49Q6P9L4 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Gm10605-202ENSMUST00000183019 3198 ntBASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Gm7862-201ENSMUST00000121461 292 ntBASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Gm5864-201ENSMUST00000202263 970 ntBASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp49Q6P9L4 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Usp49Q6P9L4 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms