Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.29□□□□□ -0.12
ShhQ62226 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Ccdc166-201ENSMUST00000182172 2584 ntBASIC14.29□□□□□ -0.12
ShhQ62226 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ShhQ62226 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Gm11780-201ENSMUST00000136880 516 ntBASIC14.28□□□□□ -0.12
ShhQ62226 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.28□□□□□ -0.12
ShhQ62226 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
ShhQ62226 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.28□□□□□ -0.12
ShhQ62226 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ShhQ62226 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC14.28□□□□□ -0.12
ShhQ62226 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
ShhQ62226 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
ShhQ62226 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.28□□□□□ -0.12
ShhQ62226 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
ShhQ62226 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
ShhQ62226 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
ShhQ62226 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ShhQ62226 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
ShhQ62226 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
ShhQ62226 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.27□□□□□ -0.13
ShhQ62226 Gm37171-201ENSMUST00000192636 1185 ntBASIC14.27□□□□□ -0.13
ShhQ62226 Gm43438-201ENSMUST00000198133 379 ntBASIC14.27□□□□□ -0.13
ShhQ62226 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.27□□□□□ -0.13
ShhQ62226 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC14.27□□□□□ -0.13
ShhQ62226 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14.27□□□□□ -0.13
ShhQ62226 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Gm44443-201ENSMUST00000204396 5633 ntBASIC14.27□□□□□ -0.13
ShhQ62226 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
ShhQ62226 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
ShhQ62226 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.27□□□□□ -0.13
ShhQ62226 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
ShhQ62226 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ShhQ62226 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.26□□□□□ -0.13
ShhQ62226 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
ShhQ62226 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
ShhQ62226 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Gm17271-201ENSMUST00000165535 355 ntBASIC14.26□□□□□ -0.13
ShhQ62226 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
ShhQ62226 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC14.26□□□□□ -0.13
ShhQ62226 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC14.26□□□□□ -0.13
ShhQ62226 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
ShhQ62226 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ShhQ62226 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms