Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Gm43598-201ENSMUST00000202482 2479 ntBASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim58Q5NCC9 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Gm29340-201ENSMUST00000188763 3854 ntBASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Gm24589-201ENSMUST00000116692 94 ntBASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim58Q5NCC9 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Celf4-206ENSMUST00000224553 1729 ntBASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Gm11185-201ENSMUST00000117732 1007 ntBASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Gm5682-201ENSMUST00000173402 505 ntBASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Gm16425-201ENSMUST00000118143 3130 ntBASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC19.35■□□□□ 0.69
Trim58Q5NCC9 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Gm5357-201ENSMUST00000212720 1924 ntBASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Gm18489-201ENSMUST00000172565 551 ntBASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Gm10819-201ENSMUST00000099988 561 ntBASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim58Q5NCC9 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim58Q5NCC9 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms