Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Gm37748-201ENSMUST00000194379 1140 ntBASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Gm45059-201ENSMUST00000205558 1077 ntBASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddb1Q3U1J4 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Mir7085-201ENSMUST00000184353 66 ntBASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Gm18018-201ENSMUST00000198273 408 ntBASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 CT009510.1-201ENSMUST00000227972 270 ntBASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddb1Q3U1J4 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Gm4875-201ENSMUST00000118257 786 ntBASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Gm14042-201ENSMUST00000120139 833 ntBASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Cd63-ps-201ENSMUST00000145417 875 ntBASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Gm9908-201ENSMUST00000211534 448 ntBASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddb1Q3U1J4 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Gm12091-201ENSMUST00000146791 830 ntBASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Gm8602-201ENSMUST00000184045 607 ntBASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Gm45195-201ENSMUST00000205597 1008 ntBASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Gm44719-201ENSMUST00000206404 149 ntBASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddb1Q3U1J4 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms