Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC15.58■□□□□ 0.08
Sox1P53783 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.58■□□□□ 0.08
Sox1P53783 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.58■□□□□ 0.08
Sox1P53783 Gm42693-201ENSMUST00000196779 631 ntBASIC15.58■□□□□ 0.08
Sox1P53783 Gm4959-201ENSMUST00000197271 1044 ntBASIC15.58■□□□□ 0.08
Sox1P53783 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC15.58■□□□□ 0.08
Sox1P53783 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Sox1P53783 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Sox1P53783 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC15.57■□□□□ 0.08
Sox1P53783 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC15.57■□□□□ 0.08
Sox1P53783 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Gm18624-201ENSMUST00000220966 658 ntBASIC15.57■□□□□ 0.08
Sox1P53783 Shd-206ENSMUST00000225145 998 ntBASIC15.57■□□□□ 0.08
Sox1P53783 AC159006.1-201ENSMUST00000226396 258 ntBASIC15.57■□□□□ 0.08
Sox1P53783 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.57■□□□□ 0.08
Sox1P53783 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Sox1P53783 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC15.57■□□□□ 0.08
Sox1P53783 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Sox1P53783 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.56■□□□□ 0.08
Sox1P53783 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Sox1P53783 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Sox1P53783 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC15.56■□□□□ 0.08
Sox1P53783 Gm7619-201ENSMUST00000210649 1282 ntBASIC15.56■□□□□ 0.08
Sox1P53783 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC15.56■□□□□ 0.08
Sox1P53783 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 AC114008.2-201ENSMUST00000227699 1347 ntBASIC15.56■□□□□ 0.08
Sox1P53783 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
Sox1P53783 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.56■□□□□ 0.08
Sox1P53783 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Sox1P53783 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Sox1P53783 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Sox1P53783 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Gm37519-201ENSMUST00000191687 2210 ntBASIC15.55■□□□□ 0.08
Sox1P53783 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC15.55■□□□□ 0.08
Sox1P53783 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC15.55■□□□□ 0.08
Sox1P53783 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC15.55■□□□□ 0.08
Sox1P53783 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Sox1P53783 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC15.55■□□□□ 0.08
Sox1P53783 AC159896.2-201ENSMUST00000214753 269 ntBASIC15.55■□□□□ 0.08
Sox1P53783 AC154319.1-201ENSMUST00000216330 312 ntBASIC15.55■□□□□ 0.08
Sox1P53783 AL589735.1-201ENSMUST00000224353 270 ntBASIC15.55■□□□□ 0.08
Sox1P53783 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sox1P53783 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Sox1P53783 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Sox1P53783 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sox1P53783 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC15.54■□□□□ 0.08
Sox1P53783 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC15.54■□□□□ 0.08
Sox1P53783 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms