Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.88□□□□□ -0.19
Lmx1bO88609 AC174742.1-201ENSMUST00000218272 304 ntBASIC13.88□□□□□ -0.19
Lmx1bO88609 Bloc1s5-203ENSMUST00000224902 612 ntBASIC13.88□□□□□ -0.19
Lmx1bO88609 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lmx1bO88609 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Lmx1bO88609 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC13.87□□□□□ -0.19
Lmx1bO88609 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
Lmx1bO88609 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Gm6736-201ENSMUST00000166583 948 ntBASIC13.87□□□□□ -0.19
Lmx1bO88609 Mir3113-201ENSMUST00000175478 76 ntBASIC13.87□□□□□ -0.19
Lmx1bO88609 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lmx1bO88609 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Gm9682-201ENSMUST00000197505 556 ntBASIC13.87□□□□□ -0.19
Lmx1bO88609 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Gm45683-201ENSMUST00000210825 1247 ntBASIC13.87□□□□□ -0.19
Lmx1bO88609 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Gm7229-201ENSMUST00000214719 1007 ntBASIC13.87□□□□□ -0.19
Lmx1bO88609 AC151836.1-202ENSMUST00000226259 753 ntBASIC13.87□□□□□ -0.19
Lmx1bO88609 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Lmx1bO88609 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lmx1bO88609 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Gm38327-201ENSMUST00000195852 1755 ntBASIC13.86□□□□□ -0.19
Lmx1bO88609 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Gm25911-201ENSMUST00000157621 56 ntBASIC13.86□□□□□ -0.19
Lmx1bO88609 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Gm27397-201ENSMUST00000184997 107 ntBASIC13.86□□□□□ -0.19
Lmx1bO88609 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Gm10175-201ENSMUST00000086013 645 ntBASIC13.86□□□□□ -0.19
Lmx1bO88609 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
Lmx1bO88609 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 AC154412.1-201ENSMUST00000226540 2786 ntBASIC13.86□□□□□ -0.19
Lmx1bO88609 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lmx1bO88609 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms