Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Prpf40aQ9R1C7 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Prpf40aQ9R1C7 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Prpf40aQ9R1C7 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.9■□□□□ 0.3
Prpf40aQ9R1C7 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Prpf40aQ9R1C7 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Prpf40aQ9R1C7 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Mir8098-201ENSMUST00000184011 137 ntBASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Gm19164-201ENSMUST00000210667 640 ntBASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Prpf40aQ9R1C7 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 BC037039-201ENSMUST00000192003 2205 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm28659-201ENSMUST00000188013 759 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44357-201ENSMUST00000195897 142 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm19658-201ENSMUST00000196231 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44367-201ENSMUST00000196836 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44350-201ENSMUST00000197197 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44390-201ENSMUST00000197533 144 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44313-201ENSMUST00000198018 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44486-201ENSMUST00000198508 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44314-201ENSMUST00000199263 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44394-201ENSMUST00000199558 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44484-201ENSMUST00000199873 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44466-201ENSMUST00000200264 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gm44359-201ENSMUST00000200671 138 ntBASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
Prpf40aQ9R1C7 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 AC154412.1-201ENSMUST00000226540 2786 ntBASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Gm6376-201ENSMUST00000209407 580 ntBASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Prpf40aQ9R1C7 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms