Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm7286-201ENSMUST00000182691 1007 ntBASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm5253-201ENSMUST00000187104 1025 ntBASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm45167-201ENSMUST00000208007 322 ntBASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm7787-201ENSMUST00000216858 688 ntBASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Vps28Q9D1C8 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Gm14140-201ENSMUST00000119999 995 ntBASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Gm18489-201ENSMUST00000172565 551 ntBASIC15.71■□□□□ 0.11
Vps28Q9D1C8 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Vps28Q9D1C8 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Vps28Q9D1C8 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC15.71■□□□□ 0.1
Vps28Q9D1C8 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Vps28Q9D1C8 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Vps28Q9D1C8 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gm13337-201ENSMUST00000119183 1594 ntBASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gm27525-201ENSMUST00000184465 107 ntBASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gm9682-201ENSMUST00000197505 556 ntBASIC15.7■□□□□ 0.1
Vps28Q9D1C8 AC084391.1-201ENSMUST00000200651 141 ntBASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Vps28Q9D1C8 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps28Q9D1C8 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Vps28Q9D1C8 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps28Q9D1C8 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps28Q9D1C8 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps28Q9D1C8 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC15.69■□□□□ 0.1
Vps28Q9D1C8 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Vps28Q9D1C8 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms