Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ddx28Q9CWT6 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 AC163637.1-201ENSMUST00000215491 1894 ntBASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
Ddx28Q9CWT6 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx28Q9CWT6 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx28Q9CWT6 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Ddx28Q9CWT6 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
Ddx28Q9CWT6 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx28Q9CWT6 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms