Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Gm2213-201ENSMUST00000197485 688 ntBASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.17■□□□□ 0.34
Smc1aQ9CU62 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Smc1aQ9CU62 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Smc1aQ9CU62 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.16■□□□□ 0.34
Smc1aQ9CU62 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Gm11594-201ENSMUST00000122313 162 ntBASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Gm4535-201ENSMUST00000182274 558 ntBASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Gm10355-201ENSMUST00000097146 517 ntBASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC17.15■□□□□ 0.34
Smc1aQ9CU62 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Smc1aQ9CU62 Gm25990-201ENSMUST00000102440 86 ntBASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms