Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Gm10355-201ENSMUST00000097146 517 ntBASIC14.97□□□□□ -0.01
Msh4Q99MT2 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Msh4Q99MT2 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Msh4Q99MT2 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.96□□□□□ -0.01
Msh4Q99MT2 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.96□□□□□ -0.01
Msh4Q99MT2 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.96□□□□□ -0.01
Msh4Q99MT2 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Msh4Q99MT2 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Msh4Q99MT2 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.02
Msh4Q99MT2 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Msh4Q99MT2 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Msh4Q99MT2 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Gm13418-201ENSMUST00000119097 944 ntBASIC14.95□□□□□ -0.02
Msh4Q99MT2 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Gm8655-201ENSMUST00000221159 852 ntBASIC14.95□□□□□ -0.02
Msh4Q99MT2 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Msh4Q99MT2 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.94□□□□□ -0.02
Msh4Q99MT2 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.94□□□□□ -0.02
Msh4Q99MT2 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC14.94□□□□□ -0.02
Msh4Q99MT2 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms