Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Cstf1Q99LC2 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Gm12151-201ENSMUST00000121374 290 ntBASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Gm5779-201ENSMUST00000218467 910 ntBASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Cstf1Q99LC2 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Gm7336-201ENSMUST00000107041 1232 ntBASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cstf1Q99LC2 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.31■□□□□ 0.04
Cstf1Q99LC2 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Gm14127-201ENSMUST00000117906 678 ntBASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cstf1Q99LC2 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms