Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Gm45167-201ENSMUST00000208007 322 ntBASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Gm15590-201ENSMUST00000078419 552 ntBASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Brf1Q8CFK2 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Gm13036-201ENSMUST00000117799 748 ntBASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Gm11764-201ENSMUST00000120221 623 ntBASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Gm6184-201ENSMUST00000120403 1261 ntBASIC18.51■□□□□ 0.55
Brf1Q8CFK2 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Gm2651-201ENSMUST00000203560 838 ntBASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Brf1Q8CFK2 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gm11453-201ENSMUST00000117318 1007 ntBASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gm12350-201ENSMUST00000121208 462 ntBASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gm10499-201ENSMUST00000174094 934 ntBASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Mir5126-201ENSMUST00000175513 77 ntBASIC18.5■□□□□ 0.55
Brf1Q8CFK2 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gm7556-201ENSMUST00000201178 1084 ntBASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 AC157650.3-201ENSMUST00000225058 1476 ntBASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Gm11839-201ENSMUST00000120647 1953 ntBASIC18.5■□□□□ 0.55
Brf1Q8CFK2 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Brf1Q8CFK2 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms