Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Vps53Q8CCB4 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Vps53Q8CCB4 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Gm14494-201ENSMUST00000118786 435 ntBASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Gm14140-201ENSMUST00000119999 995 ntBASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Vps53Q8CCB4 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps53Q8CCB4 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
Vps53Q8CCB4 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.83■□□□□ 0.45
Vps53Q8CCB4 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Gm8097-201ENSMUST00000117903 829 ntBASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Gm8655-201ENSMUST00000221159 852 ntBASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Gm45605-201ENSMUST00000210265 4269 ntBASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Vps53Q8CCB4 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm13036-201ENSMUST00000117799 748 ntBASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm4459-201ENSMUST00000118750 468 ntBASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm9727-201ENSMUST00000161387 555 ntBASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm24513-201ENSMUST00000174964 138 ntBASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Vps53Q8CCB4 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms