Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.99■□□□□ 0.31
Trim47Q8C0E3 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Mir3113-201ENSMUST00000175478 76 ntBASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Gm45683-201ENSMUST00000210825 1247 ntBASIC16.98■□□□□ 0.31
Trim47Q8C0E3 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.98■□□□□ 0.31
Trim47Q8C0E3 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Gm10175-201ENSMUST00000086013 645 ntBASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim47Q8C0E3 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.97■□□□□ 0.31
Trim47Q8C0E3 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Trim47Q8C0E3 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Gm25911-201ENSMUST00000157621 56 ntBASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Mir8117-201ENSMUST00000184773 107 ntBASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
Trim47Q8C0E3 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
Trim47Q8C0E3 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.96■□□□□ 0.3
Trim47Q8C0E3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim47Q8C0E3 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Gm37935-201ENSMUST00000192012 982 ntBASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim47Q8C0E3 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.95■□□□□ 0.3
Trim47Q8C0E3 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms