Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scaf4Q6PFF0 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scaf4Q6PFF0 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scaf4Q6PFF0 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm4609-201ENSMUST00000106443 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm5138-201ENSMUST00000113842 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm15191-201ENSMUST00000117933 1000 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm12182-201ENSMUST00000118655 1008 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm13882-201ENSMUST00000120886 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm10284-201ENSMUST00000145057 1005 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm10481-201ENSMUST00000179228 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm2574-201ENSMUST00000181051 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm3200-201ENSMUST00000181493 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm8825-201ENSMUST00000182565 998 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm4518-201ENSMUST00000182638 718 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm8330-201ENSMUST00000182754 1008 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm4575-201ENSMUST00000182991 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm8709-201ENSMUST00000183230 1012 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm10293-201ENSMUST00000076317 1002 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gm6316-201ENSMUST00000082064 1020 ntBASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scaf4Q6PFF0 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 AC159093.1-201ENSMUST00000227779 380 ntBASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scaf4Q6PFF0 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms