Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim27Q62158 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim27Q62158 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim27Q62158 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim27Q62158 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Trim27Q62158 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC18.83■□□□□ 0.6
Trim27Q62158 Gm11764-201ENSMUST00000120221 623 ntBASIC18.83■□□□□ 0.6
Trim27Q62158 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.83■□□□□ 0.6
Trim27Q62158 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Gm30437-201ENSMUST00000206086 1201 ntBASIC18.83■□□□□ 0.6
Trim27Q62158 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.83■□□□□ 0.6
Trim27Q62158 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Trim27Q62158 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Celf4-206ENSMUST00000224553 1729 ntBASIC18.83■□□□□ 0.6
Trim27Q62158 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim27Q62158 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim27Q62158 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Trim27Q62158 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.82■□□□□ 0.6
Trim27Q62158 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
Trim27Q62158 Gm45167-201ENSMUST00000208007 322 ntBASIC18.82■□□□□ 0.6
Trim27Q62158 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
Trim27Q62158 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trim27Q62158 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trim27Q62158 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim27Q62158 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trim27Q62158 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trim27Q62158 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.81■□□□□ 0.6
Trim27Q62158 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC18.81■□□□□ 0.6
Trim27Q62158 AV026068-213ENSMUST00000223675 1171 ntBASIC18.81■□□□□ 0.6
Trim27Q62158 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Trim27Q62158 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim27Q62158 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC18.8■□□□□ 0.6
Trim27Q62158 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC18.8■□□□□ 0.6
Trim27Q62158 Gm4899-201ENSMUST00000178708 719 ntBASIC18.8■□□□□ 0.6
Trim27Q62158 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trim27Q62158 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim27Q62158 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.8■□□□□ 0.6
Trim27Q62158 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC18.8■□□□□ 0.6
Trim27Q62158 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim27Q62158 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trim27Q62158 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim27Q62158 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim27Q62158 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim27Q62158 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms