Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Gm45293-201ENSMUST00000209754 1812 ntBASIC19.42■□□□□ 0.7
Trim58Q5NCC9 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim58Q5NCC9 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Gm6089-201ENSMUST00000197666 938 ntBASIC19.41■□□□□ 0.7
Trim58Q5NCC9 AC154757.1-201ENSMUST00000228289 336 ntBASIC19.41■□□□□ 0.7
Trim58Q5NCC9 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Trim58Q5NCC9 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Gm7901-201ENSMUST00000120430 1597 ntBASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Gm8242-201ENSMUST00000193029 1420 ntBASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim58Q5NCC9 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim58Q5NCC9 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim58Q5NCC9 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim58Q5NCC9 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim58Q5NCC9 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC19.39■□□□□ 0.7
Trim58Q5NCC9 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Gm25990-201ENSMUST00000102440 86 ntBASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 CT009510.1-201ENSMUST00000227972 270 ntBASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Sybu-209ENSMUST00000228639 4113 ntBASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Trim58Q5NCC9 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Gm3928-201ENSMUST00000121141 1307 ntBASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim58Q5NCC9 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms