Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Upf3aQ3ULJ3 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Gm27622-201ENSMUST00000183779 60 ntBASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Upf3aQ3ULJ3 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Upf3aQ3ULJ3 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Upf3aQ3ULJ3 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.08■□□□□ 0.17
Upf3aQ3ULJ3 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Upf3aQ3ULJ3 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Upf3aQ3ULJ3 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Gm16026-204ENSMUST00000162652 683 ntBASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Gm5779-201ENSMUST00000218467 910 ntBASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Upf3aQ3ULJ3 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Gm15693-201ENSMUST00000120470 637 ntBASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Upf3aQ3ULJ3 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms