Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Gm15467-201ENSMUST00000120582 445 ntBASIC18.05■□□□□ 0.48
Limch1Q3UH68 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Limch1Q3UH68 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC18.04■□□□□ 0.48
Limch1Q3UH68 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC18.04■□□□□ 0.48
Limch1Q3UH68 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Gm15590-201ENSMUST00000078419 552 ntBASIC18.04■□□□□ 0.48
Limch1Q3UH68 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Limch1Q3UH68 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC18.03■□□□□ 0.48
Limch1Q3UH68 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Gm14722-201ENSMUST00000118943 689 ntBASIC18.03■□□□□ 0.48
Limch1Q3UH68 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.03■□□□□ 0.48
Limch1Q3UH68 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Limch1Q3UH68 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Gm6089-201ENSMUST00000197666 938 ntBASIC18.02■□□□□ 0.48
Limch1Q3UH68 Gm42670-201ENSMUST00000201816 1292 ntBASIC18.02■□□□□ 0.48
Limch1Q3UH68 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
Limch1Q3UH68 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Limch1Q3UH68 AV026068-213ENSMUST00000223675 1171 ntBASIC18.02■□□□□ 0.48
Limch1Q3UH68 AC154757.1-201ENSMUST00000228289 336 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms