Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Gm44729-201ENSMUST00000206759 2052 ntBASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Gm6263-201ENSMUST00000120029 1342 ntBASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 AC149294.4-201ENSMUST00000227870 882 ntBASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Ddb1Q3U1J4 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Gm12138-201ENSMUST00000122180 951 ntBASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Gm9719-201ENSMUST00000162765 543 ntBASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Shd-206ENSMUST00000225145 998 ntBASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ddb1Q3U1J4 Gm5320-201ENSMUST00000207163 1519 ntBASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Gm5566-201ENSMUST00000116118 459 ntBASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Gm13216-201ENSMUST00000117145 591 ntBASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Gm15593-201ENSMUST00000122085 1008 ntBASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 AC090659.2-201ENSMUST00000225378 1186 ntBASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 AC131743.5-201ENSMUST00000220775 1618 ntBASIC19.35■□□□□ 0.69
Ddb1Q3U1J4 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddb1Q3U1J4 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
Ddb1Q3U1J4 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
Ddb1Q3U1J4 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Ddb1Q3U1J4 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC19.33■□□□□ 0.69
Ddb1Q3U1J4 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ddb1Q3U1J4 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddb1Q3U1J4 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddb1Q3U1J4 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Gm7556-201ENSMUST00000201178 1084 ntBASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ddb1Q3U1J4 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms