Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Col17a1Q07563 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Col17a1Q07563 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC23.32■■□□□ 1.32
Col17a1Q07563 AC160980.1-201ENSMUST00000224136 970 ntBASIC23.32■■□□□ 1.32
Col17a1Q07563 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Col17a1Q07563 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Col17a1Q07563 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Col17a1Q07563 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm27847-201ENSMUST00000183711 107 ntBASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm27375-201ENSMUST00000183799 107 ntBASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm37986-201ENSMUST00000193285 383 ntBASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm37259-201ENSMUST00000193903 849 ntBASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm19309-201ENSMUST00000218295 205 ntBASIC23.31■■□□□ 1.32
Col17a1Q07563 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col17a1Q07563 Gm14722-201ENSMUST00000118943 689 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC23.3■■□□□ 1.32
Col17a1Q07563 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC23.3■■□□□ 1.32
Col17a1Q07563 Mir7032-201ENSMUST00000185154 79 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Gm42442-201ENSMUST00000197951 1133 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col17a1Q07563 Gm45453-201ENSMUST00000211758 853 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC23.3■■□□□ 1.32
Col17a1Q07563 CT573034.1-201ENSMUST00000222983 313 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Col17a1Q07563 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col17a1Q07563 Gm7553-201ENSMUST00000185805 1426 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC23.3■■□□□ 1.32
Col17a1Q07563 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
Col17a1Q07563 AC131743.5-201ENSMUST00000220775 1618 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC23.3■■□□□ 1.32
Col17a1Q07563 Gm7287-201ENSMUST00000205267 602 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col17a1Q07563 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col17a1Q07563 Mir433-201ENSMUST00000093564 124 ntBASIC23.3■■□□□ 1.32
Col17a1Q07563 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Col17a1Q07563 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Col17a1Q07563 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC23.29■■□□□ 1.32
Col17a1Q07563 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col17a1Q07563 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC23.29■■□□□ 1.32
Col17a1Q07563 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Col17a1Q07563 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Col17a1Q07563 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Col17a1Q07563 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC23.28■■□□□ 1.32
Col17a1Q07563 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
Col17a1Q07563 Gm19184-201ENSMUST00000196798 928 ntBASIC23.28■■□□□ 1.32
Col17a1Q07563 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC23.28■■□□□ 1.32
Col17a1Q07563 AC154846.1-201ENSMUST00000226278 862 ntBASIC23.28■■□□□ 1.32
Col17a1Q07563 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col17a1Q07563 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Col17a1Q07563 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col17a1Q07563 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC23.27■■□□□ 1.32
Col17a1Q07563 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col17a1Q07563 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Col17a1Q07563 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC23.27■■□□□ 1.32
Col17a1Q07563 Gm11628-201ENSMUST00000117568 171 ntBASIC23.27■■□□□ 1.32
Col17a1Q07563 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Col17a1Q07563 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Col17a1Q07563 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC23.27■■□□□ 1.32
Col17a1Q07563 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Col17a1Q07563 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Col17a1Q07563 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col17a1Q07563 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col17a1Q07563 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col17a1Q07563 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col17a1Q07563 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC23.26■■□□□ 1.31
Col17a1Q07563 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 89.7 ms