Protein–RNA interactions for Protein: P59240

Nphp4, Nephrocystin-4, mousemouse

Predictions only

Length 1,425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nphp4P59240 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
Nphp4P59240 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Nphp4P59240 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
Nphp4P59240 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC20.65■□□□□ 0.9
Nphp4P59240 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Nphp4P59240 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC20.65■□□□□ 0.9
Nphp4P59240 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Nphp4P59240 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nphp4P59240 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Nphp4P59240 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nphp4P59240 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Nphp4P59240 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nphp4P59240 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC20.64■□□□□ 0.89
Nphp4P59240 Gm38225-201ENSMUST00000194001 393 ntBASIC20.64■□□□□ 0.89
Nphp4P59240 Gm20949-201ENSMUST00000206478 952 ntBASIC20.64■□□□□ 0.89
Nphp4P59240 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Nphp4P59240 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Nphp4P59240 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nphp4P59240 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Nphp4P59240 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Nphp4P59240 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Gm6415-201ENSMUST00000118488 348 ntBASIC20.63■□□□□ 0.89
Nphp4P59240 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC20.63■□□□□ 0.89
Nphp4P59240 Gm27618-201ENSMUST00000183671 60 ntBASIC20.63■□□□□ 0.89
Nphp4P59240 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC20.63■□□□□ 0.89
Nphp4P59240 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Nphp4P59240 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Nphp4P59240 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC20.63■□□□□ 0.89
Nphp4P59240 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nphp4P59240 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC20.62■□□□□ 0.89
Nphp4P59240 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC20.62■□□□□ 0.89
Nphp4P59240 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC20.62■□□□□ 0.89
Nphp4P59240 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Hivep3-201ENSMUST00000084306 2973 ntBASIC20.62■□□□□ 0.89
Nphp4P59240 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
Nphp4P59240 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nphp4P59240 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC20.61■□□□□ 0.89
Nphp4P59240 Gm14057-201ENSMUST00000120631 482 ntBASIC20.61■□□□□ 0.89
Nphp4P59240 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Gm28630-201ENSMUST00000187806 498 ntBASIC20.61■□□□□ 0.89
Nphp4P59240 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC20.61■□□□□ 0.89
Nphp4P59240 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC20.61■□□□□ 0.89
Nphp4P59240 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Nphp4P59240 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Prob1-201ENSMUST00000097619 3021 ntBASIC20.61■□□□□ 0.89
Nphp4P59240 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Gm11839-201ENSMUST00000120647 1953 ntBASIC20.61■□□□□ 0.89
Nphp4P59240 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Nphp4P59240 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nphp4P59240 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Nphp4P59240 Gm38294-201ENSMUST00000192831 381 ntBASIC20.61■□□□□ 0.89
Nphp4P59240 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC20.61■□□□□ 0.89
Nphp4P59240 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nphp4P59240 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nphp4P59240 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Nphp4P59240 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nphp4P59240 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nphp4P59240 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
Nphp4P59240 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nphp4P59240 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms