Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Cux1P53564 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC23.34■■□□□ 1.33
Cux1P53564 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Cux1P53564 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Cux1P53564 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Cux1P53564 Gm29310-201ENSMUST00000185468 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21825-201ENSMUST00000185728 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm29109-201ENSMUST00000185895 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21896-201ENSMUST00000186520 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21873-201ENSMUST00000186728 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21794-201ENSMUST00000187056 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21880-201ENSMUST00000187275 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21826-201ENSMUST00000187451 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21198-201ENSMUST00000188393 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21749-201ENSMUST00000189343 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21901-201ENSMUST00000189568 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm29424-201ENSMUST00000189716 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm28599-201ENSMUST00000189838 694 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21867-201ENSMUST00000189917 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm29269-201ENSMUST00000190087 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21722-201ENSMUST00000190153 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm28423-201ENSMUST00000190701 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21899-201ENSMUST00000190745 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21910-201ENSMUST00000191163 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21849-201ENSMUST00000191571 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm28678-201ENSMUST00000191593 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm20910-201ENSMUST00000193268 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Gm21871-201ENSMUST00000194621 696 ntBASIC23.33■■□□□ 1.33
Cux1P53564 AC130829.1-201ENSMUST00000221548 494 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Dupd1-202ENSMUST00000224735 548 ntBASIC23.33■■□□□ 1.33
Cux1P53564 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Cux1P53564 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Cux1P53564 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Cux1P53564 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Cux1P53564 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
Cux1P53564 Gm45244-201ENSMUST00000211328 2200 ntBASIC23.33■■□□□ 1.32
Cux1P53564 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Cux1P53564 Gm22189-201ENSMUST00000103822 86 ntBASIC23.33■■□□□ 1.32
Cux1P53564 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Cux1P53564 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
Cux1P53564 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC23.33■■□□□ 1.32
Cux1P53564 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Cux1P53564 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Cux1P53564 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Cux1P53564 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC23.32■■□□□ 1.32
Cux1P53564 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC23.32■■□□□ 1.32
Cux1P53564 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cux1P53564 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC23.31■■□□□ 1.32
Cux1P53564 Gm5566-201ENSMUST00000116118 459 ntBASIC23.31■■□□□ 1.32
Cux1P53564 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC23.31■■□□□ 1.32
Cux1P53564 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC23.31■■□□□ 1.32
Cux1P53564 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Cux1P53564 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC23.31■■□□□ 1.32
Cux1P53564 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cux1P53564 Tcf21-202ENSMUST00000218002 1788 ntBASIC23.31■■□□□ 1.32
Cux1P53564 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC23.31■■□□□ 1.32
Cux1P53564 Syt7-205ENSMUST00000224135 1557 ntBASIC23.3■■□□□ 1.32
Cux1P53564 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Cux1P53564 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Cux1P53564 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC23.3■■□□□ 1.32
Cux1P53564 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Cux1P53564 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Cux1P53564 Gm27838-201ENSMUST00000184829 128 ntBASIC23.3■■□□□ 1.32
Cux1P53564 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC23.3■■□□□ 1.32
Cux1P53564 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Cux1P53564 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Cux1P53564 Gm37166-201ENSMUST00000195473 2474 ntBASIC23.3■■□□□ 1.32
Cux1P53564 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Cux1P53564 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Cux1P53564 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC23.3■■□□□ 1.32
Cux1P53564 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Cux1P53564 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC23.3■■□□□ 1.32
Cux1P53564 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC23.3■■□□□ 1.32
Cux1P53564 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC23.3■■□□□ 1.32
Cux1P53564 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cux1P53564 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cux1P53564 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cux1P53564 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Cux1P53564 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Cux1P53564 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cux1P53564 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms