Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.22■□□□□ 0.51
Ercc3P49135 Gm4899-201ENSMUST00000178708 719 ntBASIC18.22■□□□□ 0.51
Ercc3P49135 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
Ercc3P49135 Gm27525-201ENSMUST00000184465 107 ntBASIC18.22■□□□□ 0.51
Ercc3P49135 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC18.22■□□□□ 0.51
Ercc3P49135 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC18.22■□□□□ 0.51
Ercc3P49135 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.22■□□□□ 0.51
Ercc3P49135 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
Ercc3P49135 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
Ercc3P49135 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ercc3P49135 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.22■□□□□ 0.51
Ercc3P49135 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Ercc3P49135 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Ercc3P49135 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
Ercc3P49135 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC18.21■□□□□ 0.51
Ercc3P49135 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.21■□□□□ 0.51
Ercc3P49135 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.21■□□□□ 0.51
Ercc3P49135 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.21■□□□□ 0.51
Ercc3P49135 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Gm45212-201ENSMUST00000205831 3403 ntBASIC18.21■□□□□ 0.51
Ercc3P49135 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ercc3P49135 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Ercc3P49135 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Ercc3P49135 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Ercc3P49135 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 AC122901.1-201ENSMUST00000214203 1790 ntBASIC18.2■□□□□ 0.5
Ercc3P49135 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
Ercc3P49135 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC18.2■□□□□ 0.5
Ercc3P49135 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Ercc3P49135 AC154222.1-201ENSMUST00000223882 475 ntBASIC18.2■□□□□ 0.5
Ercc3P49135 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC18.2■□□□□ 0.5
Ercc3P49135 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Ercc3P49135 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ercc3P49135 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC18.19■□□□□ 0.5
Ercc3P49135 Gm1401-201ENSMUST00000122048 772 ntBASIC18.19■□□□□ 0.5
Ercc3P49135 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Ercc3P49135 Gm37153-201ENSMUST00000193637 231 ntBASIC18.19■□□□□ 0.5
Ercc3P49135 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.19■□□□□ 0.5
Ercc3P49135 Gm5364-201ENSMUST00000216789 889 ntBASIC18.19■□□□□ 0.5
Ercc3P49135 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Ercc3P49135 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC18.19■□□□□ 0.5
Ercc3P49135 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Ercc3P49135 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ercc3P49135 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ercc3P49135 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms