Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
Rfx1P48377 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Rfx1P48377 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rfx1P48377 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC18.35■□□□□ 0.53
Rfx1P48377 Gm6623-201ENSMUST00000173570 544 ntBASIC18.35■□□□□ 0.53
Rfx1P48377 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC18.35■□□□□ 0.53
Rfx1P48377 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Rfx1P48377 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC18.35■□□□□ 0.53
Rfx1P48377 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rfx1P48377 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx1P48377 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rfx1P48377 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Rfx1P48377 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Rfx1P48377 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Rfx1P48377 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Rfx1P48377 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Rfx1P48377 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Rfx1P48377 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Rfx1P48377 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Gm18032-201ENSMUST00000222541 538 ntBASIC18.34■□□□□ 0.53
Rfx1P48377 AC125350.1-201ENSMUST00000225115 903 ntBASIC18.34■□□□□ 0.53
Rfx1P48377 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
Rfx1P48377 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Rfx1P48377 Gm45504-201ENSMUST00000211407 2107 ntBASIC18.34■□□□□ 0.53
Rfx1P48377 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx1P48377 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Rfx1P48377 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Rfx1P48377 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rfx1P48377 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rfx1P48377 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Rfx1P48377 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Rfx1P48377 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Rfx1P48377 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.33■□□□□ 0.52
Rfx1P48377 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC18.33■□□□□ 0.52
Rfx1P48377 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rfx1P48377 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC18.32■□□□□ 0.52
Rfx1P48377 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Rfx1P48377 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC18.32■□□□□ 0.52
Rfx1P48377 AC127302.2-201ENSMUST00000215212 268 ntBASIC18.32■□□□□ 0.52
Rfx1P48377 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx1P48377 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Rfx1P48377 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms