Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Sybu-209ENSMUST00000228639 4113 ntBASIC14.16□□□□□ -0.14
Cd40lgP27548 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cd40lgP27548 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.16□□□□□ -0.14
Cd40lgP27548 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC14.16□□□□□ -0.14
Cd40lgP27548 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.16□□□□□ -0.14
Cd40lgP27548 Gm6296-201ENSMUST00000222599 943 ntBASIC14.16□□□□□ -0.14
Cd40lgP27548 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC14.16□□□□□ -0.14
Cd40lgP27548 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.16□□□□□ -0.14
Cd40lgP27548 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cd40lgP27548 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd40lgP27548 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cd40lgP27548 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 AC133083.1-201ENSMUST00000221736 2209 ntBASIC14.15□□□□□ -0.14
Cd40lgP27548 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC14.15□□□□□ -0.14
Cd40lgP27548 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd40lgP27548 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cd40lgP27548 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Cd40lgP27548 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Cd40lgP27548 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.14□□□□□ -0.15
Cd40lgP27548 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Gm7862-201ENSMUST00000121461 292 ntBASIC14.14□□□□□ -0.15
Cd40lgP27548 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Cd40lgP27548 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd40lgP27548 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cd40lgP27548 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cd40lgP27548 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC14.13□□□□□ -0.15
Cd40lgP27548 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms