Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Cdx1P18111 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
Cdx1P18111 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Cdx1P18111 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Cdx1P18111 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC12.44□□□□□ -0.42
Cdx1P18111 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Cdx1P18111 Gm7284-201ENSMUST00000131667 944 ntBASIC12.44□□□□□ -0.42
Cdx1P18111 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Cdx1P18111 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC12.44□□□□□ -0.42
Cdx1P18111 AC120002.2-201ENSMUST00000220205 773 ntBASIC12.44□□□□□ -0.42
Cdx1P18111 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Cdx1P18111 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC12.44□□□□□ -0.42
Cdx1P18111 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC12.44□□□□□ -0.42
Cdx1P18111 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Cdx1P18111 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Cdx1P18111 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Cdx1P18111 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Cdx1P18111 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC12.43□□□□□ -0.42
Cdx1P18111 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC12.43□□□□□ -0.42
Cdx1P18111 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Cdx1P18111 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Cdx1P18111 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Cdx1P18111 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Cdx1P18111 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Cdx1P18111 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC12.42□□□□□ -0.42
Cdx1P18111 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Cdx1P18111 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC12.42□□□□□ -0.42
Cdx1P18111 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
Cdx1P18111 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC12.42□□□□□ -0.42
Cdx1P18111 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Cdx1P18111 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Cdx1P18111 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Cdx1P18111 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC12.42□□□□□ -0.42
Cdx1P18111 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Cdx1P18111 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
Cdx1P18111 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC12.41□□□□□ -0.42
Cdx1P18111 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Cdx1P18111 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
Cdx1P18111 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Cdx1P18111 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms