Protein–RNA interactions for Protein: P15975

Usp53, Inactive ubiquitin carboxyl-terminal hydrolase 53, mousemouse

Predictions only

Length 1,069 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp53P15975 Gm2756-201ENSMUST00000195851 400 ntBASIC17.73■□□□□ 0.43
Usp53P15975 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Usp53P15975 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp53P15975 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp53P15975 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp53P15975 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp53P15975 AC025913.2-201ENSMUST00000220136 1766 ntBASIC17.73■□□□□ 0.43
Usp53P15975 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp53P15975 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp53P15975 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.73■□□□□ 0.43
Usp53P15975 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp53P15975 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Usp53P15975 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Usp53P15975 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.72■□□□□ 0.43
Usp53P15975 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Usp53P15975 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Usp53P15975 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Usp53P15975 Ndufaf2-202ENSMUST00000223734 556 ntBASIC17.72■□□□□ 0.43
Usp53P15975 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.72■□□□□ 0.43
Usp53P15975 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp53P15975 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Usp53P15975 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC17.71■□□□□ 0.43
Usp53P15975 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp53P15975 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Usp53P15975 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
Usp53P15975 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC17.7■□□□□ 0.42
Usp53P15975 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Usp53P15975 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
Usp53P15975 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp53P15975 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Gm12008-201ENSMUST00000117791 755 ntBASIC17.69■□□□□ 0.42
Usp53P15975 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC17.69■□□□□ 0.42
Usp53P15975 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp53P15975 AC151286.1-201ENSMUST00000198489 145 ntBASIC17.69■□□□□ 0.42
Usp53P15975 Thap2-203ENSMUST00000218989 527 ntBASIC17.69■□□□□ 0.42
Usp53P15975 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.69■□□□□ 0.42
Usp53P15975 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Usp53P15975 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp53P15975 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Usp53P15975 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Usp53P15975 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.68■□□□□ 0.42
Usp53P15975 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp53P15975 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp53P15975 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp53P15975 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp53P15975 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.68■□□□□ 0.42
Usp53P15975 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp53P15975 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp53P15975 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp53P15975 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Usp53P15975 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17.68■□□□□ 0.42
Usp53P15975 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC17.68■□□□□ 0.42
Usp53P15975 Gm9385-201ENSMUST00000117563 472 ntBASIC17.68■□□□□ 0.42
Usp53P15975 Gm16198-201ENSMUST00000118766 670 ntBASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms