Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Grk6-207ENSMUST00000225925 2769 ntBASIC11.95□□□□□ -0.5
Hoxd3P09027 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC11.95□□□□□ -0.5
Hoxd3P09027 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Gm9682-201ENSMUST00000197505 556 ntBASIC11.95□□□□□ -0.5
Hoxd3P09027 Gm43073-201ENSMUST00000198200 1189 ntBASIC11.95□□□□□ -0.5
Hoxd3P09027 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC11.94□□□□□ -0.5
Hoxd3P09027 AC131586.3-201ENSMUST00000228355 1367 ntBASIC11.94□□□□□ -0.5
Hoxd3P09027 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC11.94□□□□□ -0.5
Hoxd3P09027 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Vmn1r-ps10-201ENSMUST00000176165 889 ntBASIC11.94□□□□□ -0.5
Hoxd3P09027 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC11.94□□□□□ -0.5
Hoxd3P09027 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC11.94□□□□□ -0.5
Hoxd3P09027 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC11.94□□□□□ -0.5
Hoxd3P09027 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
Hoxd3P09027 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Hoxd3P09027 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Hoxd3P09027 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC11.93□□□□□ -0.5
Hoxd3P09027 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC11.93□□□□□ -0.5
Hoxd3P09027 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Gm4899-201ENSMUST00000178708 719 ntBASIC11.93□□□□□ -0.5
Hoxd3P09027 Gm7286-201ENSMUST00000182691 1007 ntBASIC11.93□□□□□ -0.5
Hoxd3P09027 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC11.93□□□□□ -0.5
Hoxd3P09027 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC11.93□□□□□ -0.5
Hoxd3P09027 4921527H02Rik-201ENSMUST00000196028 246 ntBASIC11.93□□□□□ -0.5
Hoxd3P09027 Gm45683-201ENSMUST00000210825 1247 ntBASIC11.93□□□□□ -0.5
Hoxd3P09027 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hoxd3P09027 AC090659.1-201ENSMUST00000224334 768 ntBASIC11.93□□□□□ -0.5
Hoxd3P09027 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms