Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.17■□□□□ 0.5
Col3a1P08121 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Col3a1P08121 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC18.17■□□□□ 0.5
Col3a1P08121 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col3a1P08121 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Col3a1P08121 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col3a1P08121 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC18.16■□□□□ 0.5
Col3a1P08121 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC18.16■□□□□ 0.5
Col3a1P08121 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC18.16■□□□□ 0.5
Col3a1P08121 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Col3a1P08121 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC18.16■□□□□ 0.5
Col3a1P08121 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Gm5779-201ENSMUST00000218467 910 ntBASIC18.16■□□□□ 0.5
Col3a1P08121 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Col3a1P08121 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Col3a1P08121 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.16■□□□□ 0.5
Col3a1P08121 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col3a1P08121 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.16■□□□□ 0.5
Col3a1P08121 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC18.15■□□□□ 0.5
Col3a1P08121 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC18.15■□□□□ 0.5
Col3a1P08121 Gm8116-201ENSMUST00000182917 1201 ntBASIC18.15■□□□□ 0.5
Col3a1P08121 Gm27622-201ENSMUST00000183779 60 ntBASIC18.15■□□□□ 0.5
Col3a1P08121 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC18.15■□□□□ 0.5
Col3a1P08121 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Col3a1P08121 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC18.15■□□□□ 0.5
Col3a1P08121 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
Col3a1P08121 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col3a1P08121 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Col3a1P08121 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.15■□□□□ 0.5
Col3a1P08121 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col3a1P08121 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col3a1P08121 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.14■□□□□ 0.5
Col3a1P08121 Gm9824-201ENSMUST00000178707 561 ntBASIC18.14■□□□□ 0.5
Col3a1P08121 Klk2-ps-201ENSMUST00000205342 571 ntBASIC18.14■□□□□ 0.5
Col3a1P08121 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Col3a1P08121 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Col3a1P08121 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col3a1P08121 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC18.13■□□□□ 0.49
Col3a1P08121 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC18.13■□□□□ 0.49
Col3a1P08121 Gm13223-201ENSMUST00000118609 747 ntBASIC18.13■□□□□ 0.49
Col3a1P08121 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
Col3a1P08121 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC18.13■□□□□ 0.49
Col3a1P08121 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC18.13■□□□□ 0.49
Col3a1P08121 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col3a1P08121 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Col3a1P08121 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Col3a1P08121 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col3a1P08121 Gm8242-201ENSMUST00000193029 1420 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms