Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Hmgb3O54879 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Hmgb3O54879 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Gm15442-201ENSMUST00000117905 1527 ntBASIC12.73□□□□□ -0.37
Hmgb3O54879 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Mir1199-201ENSMUST00000117015 119 ntBASIC12.73□□□□□ -0.37
Hmgb3O54879 Gm13181-201ENSMUST00000120117 1069 ntBASIC12.73□□□□□ -0.37
Hmgb3O54879 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Timm23-208ENSMUST00000226683 750 ntBASIC12.73□□□□□ -0.37
Hmgb3O54879 AC135637.1-201ENSMUST00000227750 365 ntBASIC12.73□□□□□ -0.37
Hmgb3O54879 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 AC148324.1-201ENSMUST00000219034 4240 ntBASIC12.73□□□□□ -0.37
Hmgb3O54879 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC12.73□□□□□ -0.37
Hmgb3O54879 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hmgb3O54879 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 AC175538.1-201ENSMUST00000225343 1269 ntBASIC12.72□□□□□ -0.37
Hmgb3O54879 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Hmgb3O54879 Gm45779-201ENSMUST00000212189 4064 ntBASIC12.72□□□□□ -0.37
Hmgb3O54879 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hmgb3O54879 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms