Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Gm12151-201ENSMUST00000121374 290 ntBASIC18.04■□□□□ 0.48
Scn11aQ9R053 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Gm15222-202ENSMUST00000228667 1726 ntBASIC18.04■□□□□ 0.48
Scn11aQ9R053 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Gm15653-201ENSMUST00000119247 907 ntBASIC18.04■□□□□ 0.48
Scn11aQ9R053 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC18.04■□□□□ 0.48
Scn11aQ9R053 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Scn11aQ9R053 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.04■□□□□ 0.48
Scn11aQ9R053 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Gm11543-201ENSMUST00000120758 370 ntBASIC18.03■□□□□ 0.48
Scn11aQ9R053 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Scn11aQ9R053 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Gm28630-201ENSMUST00000187806 498 ntBASIC18.02■□□□□ 0.48
Scn11aQ9R053 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Gm5779-201ENSMUST00000218467 910 ntBASIC18.02■□□□□ 0.48
Scn11aQ9R053 AC125350.2-201ENSMUST00000224737 727 ntBASIC18.02■□□□□ 0.48
Scn11aQ9R053 AC155729.1-201ENSMUST00000227758 544 ntBASIC18.02■□□□□ 0.48
Scn11aQ9R053 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Scn11aQ9R053 Gm24158-201ENSMUST00000175263 71 ntBASIC18.02■□□□□ 0.47
Scn11aQ9R053 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Scn11aQ9R053 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC18.02■□□□□ 0.47
Scn11aQ9R053 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Scn11aQ9R053 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Scn11aQ9R053 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms