Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm15427-201ENSMUST00000117288 531 ntBASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Gm27301-201ENSMUST00000184012 127 ntBASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Gm27494-201ENSMUST00000184735 189 ntBASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim54Q9ERP3 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Gm6226-201ENSMUST00000117765 1146 ntBASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Gm11025-201ENSMUST00000140773 466 ntBASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Gm8318-201ENSMUST00000182954 872 ntBASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Gm10576-201ENSMUST00000191927 825 ntBASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim54Q9ERP3 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Mir1895-201ENSMUST00000122615 79 ntBASIC16.6■□□□□ 0.25
Trim54Q9ERP3 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.6■□□□□ 0.25
Trim54Q9ERP3 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim54Q9ERP3 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Thap2-203ENSMUST00000218989 527 ntBASIC16.59■□□□□ 0.25
Trim54Q9ERP3 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim54Q9ERP3 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms