Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Gm29518-201ENSMUST00000190858 372 ntBASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Gm17808-201ENSMUST00000200859 894 ntBASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Gm9889-202ENSMUST00000206983 1577 ntBASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lima1Q9ERG0 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Lima1Q9ERG0 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Gm45328-201ENSMUST00000210942 917 ntBASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Lima1Q9ERG0 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Lima1Q9ERG0 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Lima1Q9ERG0 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Lima1Q9ERG0 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC15.2■□□□□ 0.02
Lima1Q9ERG0 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms