Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Gm15593-201ENSMUST00000122085 1008 ntBASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Rbfox2-206ENSMUST00000227314 1810 ntBASIC20.75■□□□□ 0.91
Scn4aQ9ER60 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Scn4aQ9ER60 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Gm27514-201ENSMUST00000183692 110 ntBASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Gm29199-201ENSMUST00000187766 775 ntBASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Gm4857-201ENSMUST00000192718 785 ntBASIC20.74■□□□□ 0.91
Scn4aQ9ER60 Mir125a-201ENSMUST00000083545 68 ntBASIC20.74■□□□□ 0.91
Scn4aQ9ER60 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scn4aQ9ER60 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 AC154846.1-201ENSMUST00000226278 862 ntBASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Gm45774-201ENSMUST00000211992 2665 ntBASIC20.72■□□□□ 0.91
Scn4aQ9ER60 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Gm37714-201ENSMUST00000194742 342 ntBASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Gm16570-201ENSMUST00000161951 436 ntBASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Gm17794-201ENSMUST00000220252 955 ntBASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
Scn4aQ9ER60 Mup-ps23-201ENSMUST00000118063 630 ntBASIC20.7■□□□□ 0.9
Scn4aQ9ER60 Gm26083-201ENSMUST00000157904 193 ntBASIC20.7■□□□□ 0.9
Scn4aQ9ER60 AC069562.2-201ENSMUST00000224644 2146 ntBASIC20.7■□□□□ 0.9
Scn4aQ9ER60 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn4aQ9ER60 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn4aQ9ER60 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.7■□□□□ 0.9
Scn4aQ9ER60 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
Scn4aQ9ER60 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 CU024892.2-201ENSMUST00000224608 832 ntBASIC20.69■□□□□ 0.9
Scn4aQ9ER60 AC132317.1-201ENSMUST00000227227 962 ntBASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms