Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Gm25745-201ENSMUST00000174945 133 ntBASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.21■□□□□ 0.35
Smc1aQ9CU62 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Smc1aQ9CU62 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Smc1aQ9CU62 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Mir5126-201ENSMUST00000175513 77 ntBASIC17.19■□□□□ 0.34
Smc1aQ9CU62 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Smc1aQ9CU62 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Gm5364-201ENSMUST00000216789 889 ntBASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Smc1aQ9CU62 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms