Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lsm1Q8VC85 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Gm4459-201ENSMUST00000118750 468 ntBASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Gm12497-201ENSMUST00000138778 237 ntBASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Gm9768-201ENSMUST00000206007 2861 ntBASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Grk6-207ENSMUST00000225925 2769 ntBASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lsm1Q8VC85 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lsm1Q8VC85 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Gm8344-201ENSMUST00000119813 856 ntBASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Gm15372-201ENSMUST00000120729 834 ntBASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Gm7506-201ENSMUST00000207758 815 ntBASIC14.75□□□□□ -0.05
Lsm1Q8VC85 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Lsm1Q8VC85 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.74□□□□□ -0.05
Lsm1Q8VC85 Gm27357-201ENSMUST00000183754 135 ntBASIC14.74□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms