Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Gm19164-201ENSMUST00000210667 640 ntBASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ushbp1Q8R370 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 BC037039-201ENSMUST00000192003 2205 ntBASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Gm14822-201ENSMUST00000122247 291 ntBASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ushbp1Q8R370 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Gm14722-201ENSMUST00000118943 689 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Gm24513-201ENSMUST00000174964 138 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Gm27397-201ENSMUST00000184997 107 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Gm6089-201ENSMUST00000197666 938 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Gm8655-201ENSMUST00000221159 852 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 AV026068-213ENSMUST00000223675 1171 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ushbp1Q8R370 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Tfap2a-203ENSMUST00000223869 2037 ntBASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Gm14140-201ENSMUST00000119999 995 ntBASIC17.21■□□□□ 0.35
Ushbp1Q8R370 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Gm6550-201ENSMUST00000187574 993 ntBASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ushbp1Q8R370 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Ushbp1Q8R370 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ushbp1Q8R370 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ushbp1Q8R370 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms