Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rpp40Q8R1F9 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Rpp40Q8R1F9 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
Rpp40Q8R1F9 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rpp40Q8R1F9 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Rpp40Q8R1F9 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.43■□□□□ 0.22
Rpp40Q8R1F9 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Rpp40Q8R1F9 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Gm11594-201ENSMUST00000122313 162 ntBASIC16.41■□□□□ 0.22
Rpp40Q8R1F9 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms