Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Gm29340-201ENSMUST00000188763 3854 ntBASIC14.53□□□□□ -0.08
Clrn1Q8K445 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.53□□□□□ -0.08
Clrn1Q8K445 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.53□□□□□ -0.08
Clrn1Q8K445 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clrn1Q8K445 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clrn1Q8K445 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clrn1Q8K445 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Clrn1Q8K445 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Clrn1Q8K445 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Clrn1Q8K445 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Clrn1Q8K445 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Gm15358-201ENSMUST00000119249 520 ntBASIC14.52□□□□□ -0.09
Clrn1Q8K445 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.52□□□□□ -0.09
Clrn1Q8K445 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Gm5864-201ENSMUST00000202263 970 ntBASIC14.52□□□□□ -0.09
Clrn1Q8K445 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clrn1Q8K445 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.51□□□□□ -0.09
Clrn1Q8K445 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Gm27646-201ENSMUST00000183989 110 ntBASIC14.51□□□□□ -0.09
Clrn1Q8K445 Mir8098-201ENSMUST00000184011 137 ntBASIC14.51□□□□□ -0.09
Clrn1Q8K445 Gm28659-201ENSMUST00000188013 759 ntBASIC14.51□□□□□ -0.09
Clrn1Q8K445 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.51□□□□□ -0.09
Clrn1Q8K445 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.51□□□□□ -0.09
Clrn1Q8K445 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clrn1Q8K445 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms