Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Brf1Q8CFK2 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Gm45212-201ENSMUST00000205831 3403 ntBASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Gm18195-201ENSMUST00000207604 706 ntBASIC18.56■□□□□ 0.56
Brf1Q8CFK2 AV026068-213ENSMUST00000223675 1171 ntBASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18.56■□□□□ 0.56
Brf1Q8CFK2 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 AC147366.1-201ENSMUST00000227671 852 ntBASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Brf1Q8CFK2 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Gm9449-201ENSMUST00000207265 1011 ntBASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Brf1Q8CFK2 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Gm18489-201ENSMUST00000172565 551 ntBASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Gm9682-201ENSMUST00000197505 556 ntBASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Brf1Q8CFK2 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Brf1Q8CFK2 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms