Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc38Q8CDN8 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Gm8655-201ENSMUST00000221159 852 ntBASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc38Q8CDN8 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc38Q8CDN8 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.08■□□□□ 0.33
Ccdc38Q8CDN8 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Gm17807-201ENSMUST00000186869 298 ntBASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC17.08■□□□□ 0.32
Ccdc38Q8CDN8 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.07■□□□□ 0.32
Ccdc38Q8CDN8 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms