Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Gm10499-201ENSMUST00000174094 934 ntBASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Trim47Q8C0E3 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Gm18246-201ENSMUST00000221023 728 ntBASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Trim47Q8C0E3 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.02■□□□□ 0.31
Trim47Q8C0E3 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim47Q8C0E3 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim47Q8C0E3 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim47Q8C0E3 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
Trim47Q8C0E3 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trim47Q8C0E3 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC17.01■□□□□ 0.31
Trim47Q8C0E3 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Gm17968-201ENSMUST00000194902 784 ntBASIC17.01■□□□□ 0.31
Trim47Q8C0E3 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim47Q8C0E3 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trim47Q8C0E3 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trim47Q8C0E3 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Gm16011-201ENSMUST00000121567 2662 ntBASIC17■□□□□ 0.31
Trim47Q8C0E3 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
Trim47Q8C0E3 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17■□□□□ 0.31
Trim47Q8C0E3 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Trim47Q8C0E3 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trim47Q8C0E3 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trim47Q8C0E3 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Trim47Q8C0E3 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim47Q8C0E3 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms