Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 BC037039-201ENSMUST00000192003 2205 ntBASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3dQ8BX13 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Gm6443-201ENSMUST00000203599 874 ntBASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Gm9449-201ENSMUST00000207265 1011 ntBASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3dQ8BX13 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Gm8349-201ENSMUST00000182720 1003 ntBASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Gm2651-201ENSMUST00000203560 838 ntBASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Vti1a-206ENSMUST00000225529 1244 ntBASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Tfap2a-203ENSMUST00000223869 2037 ntBASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3dQ8BX13 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ube3dQ8BX13 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ube3dQ8BX13 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ube3dQ8BX13 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms